This is a reported bug. Looks like they are testing some fixes, not sure when they will go live. https://github.com/LemmyNet/lemmy/issues/3588
In any event, those old deletes will never get federated out. You will need a local mod or admin to remove the items from lemm.ee
Unfortunately, as one of those 3.8k daily users, I'm still using Reddit mostly. Lemmy has a long way to go before I drop Reddit all the way.